“All of Us” Opens Precision Medicine Data Platform for Beta Testing

– The All of Us precision medication analysis program has opened its knowledge platform for beta testing, permitting investigators to supply suggestions on its preliminary assets.

The All of Us Researcher Workbench will finally assist assist research on many various points of well being and illness, resulting in extra personalised therapies and prevention methods going ahead.

“Now, researchers can start utilizing our preliminary dataset and instruments in research and inform us what’s working and what we will enhance. This second is a crucial step in our effort to speed up new discoveries,” Josh Denny, MD, MS, chief govt officer of the All of Us Analysis Program, wrote within the announcement.

The early model of the Researcher Workbench contains data shared from almost 225,000 of the primary members within the undertaking, 75 p.c of whom are from communities traditionally underrepresented in analysis and greater than 45 p.c of numerous races and ethnicities.

EHR data; knowledge from six preliminary surveys on demographics, way of life components, and general well being; and baseline bodily measures are additionally included within the preliminary platform. Researchers can use instruments that may assist them arrange collaborative workspaces and construct custom-made cohorts.

READ MORE: Big Data Analytics Tool Could Help Guide Cancer Precision Medicine

Analysis groups will want expertise with R or Python programming languages to conduct analyses on the platform, as this system doesn’t but assist integrations with different statistical software program. For future variations of the Researcher Workbench, the All of Us staff is working to increase evaluation instruments.

The platform will develop extra complete over time because the undertaking provides new knowledge and instruments, however the present model has some key limitations.

“As a result of members participate in this system at totally different paces and we’re nonetheless enrolling, we don’t have variables for all members; specifically, survey completion charges fluctuate, and the gathering and harmonization of digital well being document knowledge stay a piece in progress. We’ve got carried out some preliminary testing on organic plausibility of the info; different curation efforts are nonetheless underway,” Denny famous.

The All of Us group has additionally taken precautions to guard affected person privateness, Denny mentioned.

“Whereas we already strip out names and different identifiers from participant knowledge on the outset, we’ve made extra changes within the curation course of,” he mentioned.

READ MORE: New Data Repository Could Speed Precision Medicine for Cancer

“These embrace shifting dates and hiding or grouping the data of small clusters of members to additional scale back the dangers of reidentification. These modifications could pose challenges for epidemiological research or analysis on particular subcategories of individuals.”

The Researcher Workbench additionally requires researchers to research knowledge throughout the safe cloud-based All of Us platform. Researchers can’t obtain individual-level program knowledge on native computer systems.

The goal is to additional refine the info platform and permit for better research in the future.

“As with every beta testing interval, there will probably be technical bugs, and we’ll work by way of them. We depend on researchers’ suggestions to assist us establish usability points, iterate with us to enhance the info and instruments, and plan future enhancements,” Denny mentioned.

Researchers with NIH eRA Commons accounts could apply for entry to the platform if their establishments have signed an information use settlement with this system. Proper now, any US-based, tutorial, non-profit, or healthcare group can enter into the info use settlement.

READ MORE: Genomic Data Collaboration to Aid Precision Medicine, Drug Discovery

After the preliminary stage of the beta section, the All of Us staff plans so as to add different means of identification verification past eRA Commons and open the platform extra broadly.

“Bioinformatics and well being providers researchers will seemingly discover probably the most worth in our preliminary dataset, notably for research that consider the frequency of sure illnesses or situations. Researchers with a deal with well being disparities and underrepresented populations may even discover the present dataset helpful, given its measurement and variety,” Denny acknowledged.

Denny identified that the Researcher Workbench has adopted an information passport mannequin, which makes the knowledge broadly accessible. After researchers register with this system, conform to the principles, and full coaching on the accountable conduct of analysis, the All of Us staff will grant them permission to discover the info for a variety of research, somewhat than figuring out entry on a project-by-project foundation.

The staff may even usually replace its protocol to add new types of data over time, with ongoing knowledge curation all through the method.

“We prolong a heat welcome to researchers desirous about exploring the Researcher Workbench. We need to design this platform with you, to make it one of the best useful resource it may be. Your feedback and recommendations are central to that effort. Thanks prematurely for being beneficiant with suggestions so we will enhance,” Denny concluded. 

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